medaka from nanoporetech channel

polio-nanopore · Aug 30, 2024 · 47b3be1 · 47b3be1
1 parent 852a5f0
commit 47b3be1
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/environment.yml b/environment.yml
@@ -1,4 +1,4 @@
-name: piranha
+name: piranha2
 channels:
   - conda-forge
   - bioconda
@@ -12,6 +12,7 @@ dependencies:
   - iqtree>=2.1
   - cov-ert::jclusterfunk>=0.0.25
   - mafft
+  - nanoporetech::medaka
   - minimap2=2.17
   - rasusa=0.7.1
   - samtools=1.20

diff --git a/setup.py b/setup.py
@@ -25,7 +25,7 @@
             "pandas~=1.5",
             "snipit>=1.2",
             "biopython",
-            "medaka~=1.12.0",
+            # "medaka=1.12.1",
             "numpy~=1.26.4",
             "scipy~=1.11"
       ],