only run path check if supp file supplied

polio-nanopore · Nov 6, 2023 · 0de6cf5 · 0de6cf5
1 parent 37f3f0e
commit 0de6cf5
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/piranha/input_parsing/input_qc.py b/piranha/input_parsing/input_qc.py
@@ -242,7 +242,8 @@ def phylo_group_parsing(run_phylo_arg,
     if config[KEY_RUN_PHYLO]:
 
         misc.add_path_to_config(KEY_SUPPLEMENTARY_DATADIR,supplementary_datadir,config)
-        misc.check_path_exists(config[KEY_SUPPLEMENTARY_DATADIR])
+        if config[KEY_SUPPLEMENTARY_DATADIR]:
+            misc.check_path_exists(config[KEY_SUPPLEMENTARY_DATADIR])
 
         misc.add_arg_to_config(KEY_UPDATE_LOCAL_DATABASE,update_local_database,config)
         if config[KEY_UPDATE_LOCAL_DATABASE] not in [True, False]: