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Merge remote-tracking branch 'origin/mc' into mc #180

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Merge remote-tracking branch 'origin/mc' into mc

Merge remote-tracking branch 'origin/mc' into mc #180

Workflow file for this run

.github/workflows/main.yml at eb373ba
name: Github Action
on: [push, pull_request]
jobs:
clean:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Black formatting
uses: lgeiger/[email protected]
with:
args: "./"
- name: Run isort
uses: jamescurtin/isort-action@master
with:
configuration: --profile black
- name: Check for modified files
id: git-check
run: echo ::set-output name=modified::$(if git diff-index --quiet HEAD --; then echo "false"; else echo "true"; fi)
- name: Push changes
if: steps.git-check.outputs.modified == 'true'
run: |
git config --global user.name "romainsacchi"
git config --global user.email "[email protected]"
git remote set-url origin https://x-access-token:${{ secrets.GITHUB_TOKEN }}@github.com/$GITHUB_REPOSITORY
git checkout $GITHUB_HEAD_REF
git commit -am "Black reformating"
git push
lint:
runs-on: ubuntu-latest
needs: clean
steps:
- name: Checkout source code
uses: actions/checkout@v2
with:
# Full git history is needed to get a proper list
# of changed files within `super-linter`
fetch-depth: 0
- name: Super-Linter
uses: github/super-linter@v4
env:
ERRORS: false
VALIDATE_ALL_CODEBASE: true
VALIDATE_PYTHON: true
DEFAULT_BRANCH: master
IGNORE_GITIGNORED_FILES: true
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN}}
build:
runs-on: ${{matrix.os}}
strategy:
matrix:
os: [ubuntu-latest]
needs: clean
steps:
- uses: actions/checkout@v2
- name: Install python version
uses: gabrielfalcao/pyenv-action@v13
with:
default: 3.10.6
command: pip install -U pip
- name: create environment
run: pyenv local 3.10.6 && python -mvenv .venv390
- name: Install dependencies
run: |
pip install -r requirements.txt --upgrade pip
pip install .
pip install pytest
- name: Run tests
run: |
pip list
pytest
Pypi:
runs-on: ubuntu-latest
needs: build
strategy:
fail-fast: false
matrix:
os: [ "ubuntu-latest" ]
python-version: [ "3.10" ]
steps:
- uses: actions/checkout@v2
- name: Install pypa/build
run: >-
python -m
pip install
build
--user
- name: Build a binary wheel and a source tarball
run: >-
python -m
build
--sdist
--wheel
--outdir dist/
.
- name: Publish distribution 📦 to PyPI if Release
if: startsWith(github.ref, 'refs/tags')
uses: pypa/gh-action-pypi-publish@release/v1
with:
password: ${{ secrets.PYPI_API_TOKEN }}
skip-existing: true
- name: Publish distribution 📦 to Test PyPI if Push
uses: pypa/gh-action-pypi-publish@release/v1
with:
password: ${{ secrets.TEST_PYPI_API_TOKEN }}
repository-url: https://test.pypi.org/legacy/
skip-existing: true
conda:
name: (${{ matrix.python-version }}, ubuntu-latest)
runs-on: ubuntu-latest
needs: build
strategy:
fail-fast: false
matrix:
os: ["ubuntu-latest"]
python-version: [ "3.10" ]
steps:
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v3
with:
python-version: ${{ matrix.python-version }}
channels: conda-forge,cmutel,konstantinstadler,haasad,pascallesage,romainsacchi
allow-softlinks: true
channel-priority: strict
auto-update-conda: true
activate-environment: test
- name: Conda info
shell: bash -l {0}
run: conda info
- name: Git checkout
uses: actions/checkout@v1
- name: Branch name
run: echo running on branch ${GITHUB_REF##*/}
- name: Publish distribution 📦 to Anaconda if Push from non-master branch
if: github.ref != 'refs/heads/master'
shell: bash -l {0}
run: |
PKG_NAME=pathways
USER=romainsacchi
conda install anaconda-client
conda install conda-build
conda install conda-verify
conda install pytest
conda clean --all
mkdir ~/conda-bld
conda config --set anaconda_upload no
export CONDA_BLD_PATH=~/conda-bld
export VERSION=`date +%Y.%m.%d`
conda build "conda/" --old-build-string
conda-verify $CONDA_BLD_PATH/noarch/$PKG_NAME-$VERSION-py_0.tar.bz2
ls $CONDA_BLD_PATH/noarch/
anaconda -t ${{ secrets.ANACONDA_CLOUD }} upload -u $USER $CONDA_BLD_PATH/noarch/$PKG_NAME-$VERSION-py_0.tar.bz2 --force
testconda:
name: (${{ matrix.python-version }}, ${{ matrix.os }})
runs-on: ${{ matrix.os }}
needs: conda
strategy:
fail-fast: false
matrix:
os: ["ubuntu-latest"]
python-version: [ "3.10" ]
steps:
- uses: actions/checkout@v2
- uses: conda-incubator/setup-miniconda@v2
with:
python-version: ${{ matrix.python-version }}
channels: conda-forge,cmutel,konstantinstadler,haasad,pascallesage,romainsacchi
allow-softlinks: true
channel-priority: strict
auto-update-conda: true
activate-environment: test
- name: Pull distribution 📦 from Anaconda and test it if master branch
if: github.ref == 'refs/heads/master'
shell: bash -l {0}
run: |
conda install -c romainsacchi pathways
conda update pathways
conda install pytest
pytest
- name: Pull distribution 📦 from Anaconda and test it if non-master branch
if: github.ref != 'refs/heads/master'
shell: bash -l {0}
run: |
conda install -c romainsacchi pathways-dev
conda update pathways-dev
conda install pytest
pytest