Add text for each bar showing kmer and percentage frequency

pnnl · Mar 5, 2017 · 0f527b4 · 0f527b4
1 parent 38fb44f
commit 0f527b4
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/mercat/mercat.py b/mercat/mercat.py
@@ -485,7 +485,7 @@ def mercat_main():
     os.chdir(plots_dir)
 
     for basename_ipfile in top10_all_samples:
-        df10,sum_kmer_count = top10_all_samples[basename_ipfile]
+        df10,_ = top10_all_samples[basename_ipfile]
         if mflag_protein:
             mercat_scatter_plots(basename_ipfile, 'PI', df10, kmerstring)
             mercat_scatter_plots(basename_ipfile, 'MW', df10, kmerstring)
@@ -496,7 +496,7 @@ def mercat_main():
 
     sbname = os.path.basename(m_inputfolder)
     if len(all_ipfiles) == 1: sbname = os.path.basename(all_ipfiles[0])
-    mercat_stackedbar_plots(sbname,top10_all_samples, 'Count', kmerstring, sum_kmer_count)
+    mercat_stackedbar_plots(sbname,top10_all_samples, 'Count', kmerstring)
 
 
 

diff --git a/mercat/metrics.py b/mercat/metrics.py
@@ -292,7 +292,7 @@ def mercat_scatter_plots(bif,xlab,res_df,kmerstring):
 
 
 
-def mercat_stackedbar_plots(inp_folder,top10_all_samples,xlab,kmerstring,total_freq_count):
+def mercat_stackedbar_plots(inp_folder,top10_all_samples,xlab,kmerstring):
     axis_title_font_size = 20
     axis_tick_label_size = 18
     legend_font_size = 14
@@ -306,7 +306,7 @@ def mercat_stackedbar_plots(inp_folder,top10_all_samples,xlab,kmerstring,total_f
     kmernames = dict()
 
     for bif in top10_all_samples:
-        res_df,_ = top10_all_samples[bif]
+        res_df,total_freq_count = top10_all_samples[bif]
         index_vals = res_df.index.values
         kmernames[bif]=index_vals
         #topk10 = min(len(index_vals), 10)