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changelog
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GiovanniBussi committed Mar 8, 2023
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Expand Up @@ -22,6 +22,7 @@ This page contains changes that will end up in 2.9
- SimpleMD has been parallelized with OpenMP. Keyword `maxneighbor` has been removed (not needed anymore).
In addition, SimpleMD now supports custom values for `epsilon` and `sigma`
- \ref CENTER and \ref COM have new options `SET_CHARGE` and `SET_MASS` to assign them ad hoc charge and mass values
- A tool to compute time-averaged bias potentials has been added in the python module (see `help(plumed.hills_time_average)`).

- New in LogMFD module:
- `TEMPPD` keyword has been newly introduced, which allows for manually setting the temperature of the Boltzmann factor in the Jarzynski weight in LogPD.
Expand All @@ -44,4 +45,6 @@ This page contains changes that will end up in 2.9
- Added thread-safe reference counter to wrapper.
- Added locks for thread-unsafe molfile plugins.
- Plumed patch now accepts the `--include` option. Might become the default in a future version.
- Python (cython) wrappers now only use plain C instead of C++. Plumed exceptions are mapped to python exceptions.
- Step number is now stored as a `long long int`. Might facilitate Windows compatibility.

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Found broken examples in automatic/a-masterclass-22-09.txt
Found broken examples in automatic/a-masterclass-22-11.txt
Found broken examples in automatic/a-masterclass-22-12.txt
Found broken examples in automatic/performance-optimization.txt
Found broken examples in automatic/a-trieste-6.txt
Found broken examples in automatic/munster.txt
Found broken examples in automatic/ANN.tmp
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Found broken examples in automatic/ENVIRONMENTSIMILARITY.tmp
Found broken examples in automatic/FOURIER_TRANSFORM.tmp
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Found broken examples in automatic/FUNCPATHMSD.tmp
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Found broken examples in automatic/GHBFIX.tmp
Found broken examples in automatic/INCLUDE.tmp
Found broken examples in automatic/MAZE_MEMETIC_SAMPLING.tmp
Found broken examples in automatic/MAZE_OPTIMIZER_BIAS.tmp
Found broken examples in automatic/MAZE_RANDOM_ACCELERATION_MD.tmp
Found broken examples in automatic/MAZE_RANDOM_WALK.tmp
Found broken examples in automatic/MAZE_SIMULATED_ANNEALING.tmp
Found broken examples in automatic/MAZE_STEERED_MD.tmp
Found broken examples in automatic/PIV.tmp
Found broken examples in automatic/PLUMED.tmp
Found broken examples in MiscelaneousPP.md

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