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update OPES explore bibliography (#975)
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invemichele authored Sep 28, 2023
1 parent 163da37 commit 154b897
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Showing 2 changed files with 9 additions and 4 deletions.
2 changes: 1 addition & 1 deletion src/opes/OPESmetad.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -934,7 +934,7 @@ OPESmetad<mode>::OPESmetad(const ActionOptions& ao)
log.printf(" Bibliography: ");
log<<plumed.cite("M. Invernizzi and M. Parrinello, J. Phys. Chem. Lett. 11, 2731-2736 (2020)");
if(mode::explore || adaptive_sigma_)
log<<plumed.cite("M. Invernizzi and M. Parrinello, preprint arXiv:2201.09950 (2022)");
log<<plumed.cite("M. Invernizzi and M. Parrinello, J. Chem. Theory Comput. 18, 3988-3996 (2022)");
log.printf("\n");
}

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11 changes: 8 additions & 3 deletions user-doc/bibliography.bib
Original file line number Diff line number Diff line change
Expand Up @@ -3130,11 +3130,16 @@ @article{Invernizzi2020unified

%%% OPES %%%
@article{Invernizzi2022explore,
title = {Exploration vs Convergence Speed in Adaptive-bias Enhanced Sampling},
title = {Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling},
author = {Invernizzi, Michele and Parrinello, Michele},
journal = {preprint arXiv:2201.09950},
journal = {Journal of Chemical Theory and Computation},
volume = {18},
number = {6},
pages = {3988-3996},
year = {2022},
url = {https://arxiv.org/abs/2201.09950}
doi = {10.1021/acs.jctc.2c00152},
url = {https://doi.org/10.1021/acs.jctc.2c00152},
arxivId = {2201.09950}
}

@article{limongelli2013funnel,
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Found broken examples in automatic/performance-optimization.txt
Found broken examples in automatic/a-trieste-6.txt
Found broken examples in automatic/munster.txt
Found broken examples in automatic/ANN.tmp
Found broken examples in automatic/EDS.tmp
Found broken examples in automatic/EMMI.tmp
Found broken examples in automatic/ENVIRONMENTSIMILARITY.tmp
Found broken examples in automatic/FOURIER_TRANSFORM.tmp
Found broken examples in automatic/FUNCPATHGENERAL.tmp
Found broken examples in automatic/FUNCPATHMSD.tmp
Found broken examples in automatic/FUNNEL.tmp
Found broken examples in automatic/FUNNEL_PS.tmp
Found broken examples in automatic/GHBFIX.tmp
Found broken examples in automatic/INCLUDE.tmp
Found broken examples in automatic/MAZE_MEMETIC_SAMPLING.tmp
Found broken examples in automatic/MAZE_OPTIMIZER_BIAS.tmp
Found broken examples in automatic/MAZE_RANDOM_ACCELERATION_MD.tmp
Found broken examples in automatic/MAZE_RANDOM_WALK.tmp
Found broken examples in automatic/MAZE_SIMULATED_ANNEALING.tmp
Found broken examples in automatic/MAZE_STEERED_MD.tmp
Found broken examples in automatic/PIV.tmp
Found broken examples in automatic/PLUMED.tmp
Found broken examples in MiscelaneousPP.md

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