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Fix check_inputs #2

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Fix check_inputs #2

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6fbeb68
Correcting some links in check_inputs
Iximiel Dec 13, 2024
05b1ffd
simplifying the local testing
Iximiel Dec 13, 2024
f3683a2
removing the duplicated print( PlumedToHTML.get_html_header() )
Iximiel Dec 13, 2024
767f24c
small improvement for the create_inputs test
Iximiel Dec 13, 2024
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9 changes: 9 additions & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -6,3 +6,12 @@ build
.tox
__pycache__
coverage.xml
# remainings of tox tests
/colvar*
/bck*
/plinp*
/testmarkdown*
/mermaid*
# virtual environments
/venv*
/env*
13 changes: 9 additions & 4 deletions check_inputs/create_inputs.py
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Expand Up @@ -37,18 +37,23 @@
print('<h2 class="project-tagline">The community-developed PLUgin for MolEcular Dynamics</h2>')
print('</section>')
print('<section class="main-content">', flush=True)

f = open("../tdata/tests.json")
# Putting this here You can see render the page while it is being generated
print( PlumedToHTML.get_html_header() )
f = open("./tdata/tests.json")
tests = json.load(f)
f.close()

for item in tests["regtests"] :
actions = set({})
out = PlumedToHTML.test_and_get_html( item["input"], "plinp" + str(item["index"]), actions=actions )
print("Input number " + str(item["index"]))

print(f"<h3>Input number {item['index']}</h3>")
#this visualizes the "from-to" and it is more clear to eye-check what is going on
print("<pre>")
print(item["input"])
print("</pre>")
print( out )

print( PlumedToHTML.get_html_header() )
print('</section>')
print('</body>')
print('</html>')
34 changes: 19 additions & 15 deletions check_inputs/make_inputs.sh
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@@ -1,18 +1,22 @@
#!/bin/bash
PlumedToHTMLInstalled=no
# This script will test PlumedToHTML (without needing to install it)

# Delete all the crap from the last time we ran this
for file in `ls .` ; do
if [ $file != "make_inputs.sh" ] && [ $file != "create_inputs.py" ] ; then
rm -rf $file
fi
done

# Create symbolic links to PlumedToHMTL
ln -s ../PlumedToHTML/PlumedFormatter.py .
ln -s ../PlumedToHTML/PlumedToHTML.py .
ln -s ../PlumedToHTML/PlumedLexer.py
ln -s ../PlumedtoHTML/assets .
ln -s ../tdata .

# Clean the previous run
rm -rf testDir
mkdir testDir
cd testDir || {
echo "error in creating the testDirectory"
exit 1
}
if [[ $PlumedToHTMLInstalled = no ]]; then
# Create symbolic links to PlumedToHMTL
ln -s ../../PlumedToHTML/PlumedFormatter.py .
ln -s ../../PlumedToHTML/PlumedToHTML.py .
ln -s ../../PlumedToHTML/PlumedLexer.py .
ln -s ../../PlumedToHTML/assets .
fi
ln -s ../../tdata .
cp ../create_inputs.py .
# And run the python
python create_inputs.py > check_site.html
python create_inputs.py >check_site.html
4 changes: 4 additions & 0 deletions requirements.txt
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@@ -0,0 +1,4 @@
lxml
pygments
requests
bs4
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