Pinello Lab
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- CRISPResso2 Public
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
pinellolab/CRISPResso2’s past year of commit activity - CRISPR-millipede-target Public
Calculate the enrichment scores of CRISPR alleles and variants from direct target amplicon-sequencing data using Bayesian linear regression model "millipede".
pinellolab/CRISPR-millipede-target’s past year of commit activity - CRISPR-Correct Public
Perform CRISPR guide mapping and analysis that considers protospace self-editing and surrogate sensor sequences. Self-editing aware mapping takes a hamming-distance approach unbiased by expectations in editing patterns.
pinellolab/CRISPR-Correct’s past year of commit activity - DNA-Diffusion Public
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
pinellolab/DNA-Diffusion’s past year of commit activity - EPInformer Public
code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
pinellolab/EPInformer’s past year of commit activity - simba_pbg Public
A customized PyTorch-BigGraph (PBG) package for "simba", modified from https://github.com/facebookresearch/PyTorch-BigGraph
pinellolab/simba_pbg’s past year of commit activity
