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segmentation from bbox instead of empty #585

segmentation from bbox instead of empty

segmentation from bbox instead of empty #585

# This workflow will install Python dependencies, run tests and lint on several OS with a several versions of Python
# See: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: Build on Win-MacOS-Ubuntu with Python 3.9-3.11
on:
push:
branches: [ "main" ]
paths-ignore:
- 'README.md'
- 'Content/**'
pull_request:
branches: [ "main" ]
permissions:
contents: read
jobs:
build:
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, macos-latest, windows-latest]
python-version: [3.9, "3.10", "3.11"]
steps:
- name: Checkout code
uses: actions/checkout@v4
- name: Cache conda environment
uses: actions/cache@v4
with:
path: ${{ matrix.os == 'windows-latest' && 'C:\\Users\\runneradmin\\.conda' || '~/.conda' }}
key: ${{ runner.os }}-conda-${{ matrix.python-version }}-${{ hashFiles('**/environment.yml') }}
restore-keys: ${{ runner.os }}-conda-${{ matrix.python-version }}-
- name: Install Miniconda
uses: conda-incubator/setup-miniconda@v3
with:
auto-update-conda: true
python-version: ${{ matrix.python-version }}
activate-environment: pose2sim
- name: Install OpenSim with conda
run: |
conda install -n pose2sim -c conda-forge -c defaults pip
conda install -n pose2sim opensim-org::opensim -y
- name: Cache pip dependencies
uses: actions/cache@v4
with:
path: ${{ matrix.os == 'windows-latest' && 'C:\\Users\\runneradmin\\AppData\\Local\\pip\\Cache' || '~/.cache/pip' }}
key: ${{ runner.os }}-pip-${{ matrix.python-version }}-${{ hashFiles('**/requirements.txt') }}
restore-keys: ${{ runner.os }}-pip-${{ matrix.python-version }}-
- name: Install pip dependencies
run: |
conda run -n pose2sim python -m pip install --upgrade pip
conda run -n pose2sim python -m pip install flake8 pytest
conda run -n pose2sim python -m pip install git+https://github.com/${{ github.repository }}.git@${{ github.sha }}
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
conda run -n pose2sim flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
conda run -n pose2sim flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
env:
PYTHONIOENCODING: utf-8
PYTHONUNBUFFERED: "1"
KMP_DUPLICATE_LIB_OK: TRUE
run: |
cd Pose2Sim/Utilities
conda run -n pose2sim pytest -v tests.py --capture=sys