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mdyn

Mobile dynamics

Scripts to analyse mobile data and model population dynamics

Main developers:

DISCLAIMER: This study is under constant change, therefore algorithms and data have frequently changing and being improved. Please contact the authors before using any information available here.

Requires:

  • Python
  • Anaconda/conda enviroment manager
  • R

Installation:

  • After donwloading or cloning the repository
  • create enviroment with conda using

conda create --name mdyn --file spec-file.txt

  • load enviroment

conda activate mdyn

  • Create e link to the dataset (if necessary)

ln -s /tmp/inloco/data/ data

Running example:

python mdyn_run.py -f mdyn_params_SP_mesoreg.txt -o 0

  • pip install missing packages

pip install pkg_name

  • create/edit parameter files mdyn_param_xxxx.txt for different runs