Code

Singularity#77

Code

Merged

pdimens merged 23 commits intodevpdimens/harpy:devfrom singularitypdimens/harpy:singularityCopy head branch name to clipboardMay 7, 2024

+1,662-688

Commits

Commits on May 2, 2024

• simplify conda finding

  pdimens

  committed
  67e576f

• rename R env

  pdimens

  committed
  aac9b14

Commits on May 6, 2024

• add containerizeation

  pdimens

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  6c46fb0

• specify apptainer

  pdimens

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  0f37184

• fix test

  pdimens

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  b3176b3

• fixes

  pdimens

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  9e547e8

• rm apptainer code

  pdimens

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  d1110ce

• try to add clear space run

  pdimens

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  69b21da

• add missing conda arg

  pdimens

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  87e8810

• try to cache image

  pdimens

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  74e085e

• change trigger

  pdimens

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  5a08506

• try this approach

  pdimens

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  6d8ed78

• include sanity check

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  94fd381

• fix

  pdimens

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  a9d83f6

• pull artifact into all jobs

  pdimens

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  ccb0f2e

Commits on May 7, 2024

• use this simpler(?) phasing annotation

  pdimens

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  c6118c5

• simplify the split code with bcftools

  pdimens

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  c2fec15

• update summary to match workflow

  pdimens

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  dcac0ab

• add mutation rate

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  af014da

• fix

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  8082e03

• split out the main.py stuff into respective modules

  pdimens

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  2da18f1

• rm lambda

  pdimens

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  467a819

• rm extra quote

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  d0bf048