Code

fix param call#164

Code

Merged

pdimens merged 37 commits intomainpdimens/harpy:mainfrom haplotag_lrsimspdimens/harpy:haplotag_lrsimsCopy head branch name to clipboardNov 19, 2024

+772-1,001,358

Commits

Commits on Nov 15, 2024

• fix param call

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  e96e3f4

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• compress

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  8dcd783

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• clean up the logic a bit

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  1693ca2

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• add uncompressed

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  1fa481b

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• better, easier logic

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  b65ae6d

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• swap back to conda

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  4631f81

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• improvements and fixes

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  e5665d9

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• rm bc it can be generated on the fly

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  79a440d

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• typo

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  a8404d4

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• another typo

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  bd6163d

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• clean up

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  06e03c3

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• final push to make it work

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  d6d10de

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• much nicer naming

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  d7b4c78

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Commits on Nov 18, 2024

• add -a for dwgsim, -g for fastafai, comment out error rate

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  56dbe49

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• rm todo note

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  21a9da1

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• take 2-col barcode file

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  fc920e6

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• rm -r

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  2f94d82

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• update lrsim call

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  1ce1aa9

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• fix logic

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  12be7a0

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• rm len reference

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  bbbf803

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• rename to HaploSim.pl

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  0c298f2

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• fix the math

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  bd61e72

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• fixes

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  a17c527

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• rename outputs, make .status not hardcoded

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  2e24b90

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• clean up

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  3ee5d18

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• refactor the file processing

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  618f8a1

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• refactor workdirs/names

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  00cc740

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• lower barcode count

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  045e11f

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• add duplication checking

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  2847727

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• rm from progress bar b/c it'll be misleading

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  0d5f8fb

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• rename rule

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  fe1e773

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• gzip the barcodes

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  4875bd4

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• revert to dict?

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  cab9dbd

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Commits on Nov 19, 2024

• switch to sqllite3 db for memory efficiency

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  74d1498

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• rm status file altogether

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  c8373cd

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• rm status file

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  3e4c8b7

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• fixes

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  d20ee09

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