rm force single for now

pdimens · Apr 26, 2024 · c6a604b · c6a604b
1 parent 038d7ec
commit c6a604b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/harpy/rules/phase.smk b/src/harpy/rules/phase.smk
@@ -228,7 +228,7 @@ rule merge_samples:
     shell:
         """
         if [ "{params}" = true ]; then
-            bcftools merge --threads {threads} -Ob -o {output.bcf} --force-single --write-index {input.bcf}
+            bcftools merge --threads {threads} -Ob -o {output.bcf} --write-index {input.bcf}
         else
            cp {input.bcf} {output.bcf}
            cp {input.idx} {output.idx}