make phased bam files temporary

pdimens · Aug 6, 2024 · bdd5692 · bdd5692
1 parent 2a441d4
commit bdd5692
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/harpy/snakefiles/sv_naibr_pop_phase.smk b/src/harpy/snakefiles/sv_naibr_pop_phase.smk
@@ -187,7 +187,7 @@ rule phase_alignments:
         aln = get_alignments,
         ref = f"Genome/{bn}"
     output:
-        bam = outdir + "/phasedbam/{sample}.bam",
+        bam = temp(outdir + "/phasedbam/{sample}.bam"),
         log = outdir + "/logs/whatshap-haplotag/{sample}.phase.log"
     params:
         mol_dist