fix

pdimens · Aug 1, 2024 · b5d0a91 · b5d0a91
1 parent a33efdb
commit b5d0a91
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/src/harpy/snakefiles/sv_leviathan_pop.smk b/src/harpy/snakefiles/sv_leviathan_pop.smk
@@ -113,7 +113,7 @@ rule sort_alignments:
         bai = outdir + "/workflow/input/{population}.unsort.bam.bai"
     output:
         bam = outdir + "/workflow/input/{population}.bam",
-        bai = outdir + "/workflow/input/{population}.bam"
+        bai = outdir + "/workflow/input/{population}.bam.bai"
     log:
         outdir + "/logs/{population}.sort.log"
     resources:

diff --git a/src/harpy/snakefiles/sv_naibr_pop.smk b/src/harpy/snakefiles/sv_naibr_pop.smk
@@ -129,7 +129,7 @@ rule sort_alignments:
         bai = outdir + "/workflow/input/{population}.unsort.bam.bai"
     output:
         bam = outdir + "/workflow/input/{population}.bam",
-        bai = outdir + "/workflow/input/{population}.bam"
+        bai = outdir + "/workflow/input/{population}.bam.bai"
     log:
         outdir + "/logs/{population}.sort.log"
     resources:

diff --git a/src/harpy/snakefiles/sv_naibr_pop_phase.smk b/src/harpy/snakefiles/sv_naibr_pop_phase.smk
@@ -252,7 +252,7 @@ rule sort_alignments:
         bai = outdir + "/workflow/input/{population}.unsort.bam.bai"
     output:
         bam = outdir + "/workflow/input/{population}.bam",
-        bai = outdir + "/workflow/input/{population}.bam"
+        bai = outdir + "/workflow/input/{population}.bam.bai"
     log:
         outdir + "/logs/{population}.sort.log"
     resources: