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add deconcolve link
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pdimens committed Aug 6, 2024
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2 changes: 1 addition & 1 deletion Modules/qc.md
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Expand Up @@ -35,7 +35,7 @@ In addition to the [!badge variant="info" corners="pill" text="common runtime op
|:-----------------|:----------:|:------------|:-------:|:-------:|:--------------------------------------------------------------------------------------------------|
| `INPUTS` | | file/directory paths | | **yes** | Files or directories containing [input FASTQ files](/commonoptions.md#input-arguments) |
| `--deconvolve` | `-c` | toggle | | | Resolve barcode clashes between reads from different molecules |
| `--deconvolve-params` | `-p` | (int,int,int,int) | (21,40,3,0) | | Accepts the QuickDeconvolution parameters for `k`,`w`,`d`,`a`, in that order |
| `--deconvolve-params` | `-p` | (int,int,int,int) | (21,40,3,0) | | Accepts the [QuickDeconvolution parameters](/Modules/deconvolve.md/#running-options) for `k`,`w`,`d`,`a`, in that order |
| `--deduplicate` | `-d` | toggle | | | Identify and remove PCR duplicates |
| `--extra-params` | `-x` | string | | | Additional fastp arguments, in quotes |
| `--min-length` | `-n` | integer | 30 | | Discard reads shorter than this length |
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