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add missing backtick
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pdimens committed Aug 6, 2024
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7 changes: 3 additions & 4 deletions Modules/SV/naibr.md
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Expand Up @@ -196,14 +196,13 @@ SV/naibr
{.compact}
| item | description |
|:--------------|:-----------------------------------------------------------------|
| `deletions.bedpe` | an aggregation of all the deletions identified by NAIBR |
| `deletions.bedpe` | an aggregation of all the deletions identified by NAIBR |
| `duplications.bedpe` | an aggregation of all the duplications identified by NAIBR |
| `inversions.bedpe` | an aggregation of all the inversions identified by NAIBR |
| `inversions.bedpe` | an aggregation of all the inversions identified by NAIBR |
| `bedpe/` | structural variants identified by NAIBR |
| `configs/` | the configuration files harpy generated for each sample |
| `filtered/` | the variants that failed NAIBR's internal filters |
| `IGV/` | same as the output .bedpe` files but in IGV format |
| `logs/sample.groups` | if provided, a copy of the file provided to `--populations` with commented lines removed |
| `IGV/` | same as the output `.bedpe` files but in IGV format |
| `logs/*.log` | what NAIBR writes to `stderr` during operation |
| `reports/` | summary reports with interactive plots of detected SV |
| `vcf/` | the resulting variants, but in `.VCF` format |
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