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wording hotfix
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pdimens committed Nov 11, 2024
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Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions harpy/simulate.py
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Expand Up @@ -148,10 +148,10 @@ def linkedreads(genome_hap1, genome_hap2, output_dir, outer_distance, mutation_r
Two haplotype genomes (un/compressed fasta) need to be provided as inputs at the end of the command. If
you don't have a diploid genome, you can simulate one with `harpy simulate` as described [in the documentation](https://pdimens.github.io/harpy/workflows/simulate/simulate-variants/#simulate-diploid-assembly).
If not providing a text file of `--barcodes`, Harpy will download the `4M-with-alts-february-2016.txt`
If not providing a file for `--barcodes`, Harpy will download the `4M-with-alts-february-2016.txt`
file containing the standard 16-basepair 10X barcodes, which is available from 10X genomics and the
LRSIM [GitHub repository](https://github.com/aquaskyline/LRSIM/). Barcodes in the `--barcodes` file
are expected to be one 16-basepar barcode per line.
LRSIM [GitHub repository](https://github.com/aquaskyline/LRSIM/). The `--barcodes` file is
expected to have one 16-basepair barcode per line.
"""
output_dir = output_dir.rstrip("/")
workflowdir = os.path.join(output_dir, 'workflow')
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