fix text

src/harpy/reports/Naibr.Rmd

@@ -383,7 +383,7 @@ circosplot(sv, fa.sizes, samplename)
 ## per contig
 ### Per-contig {.no-title data-height=7000}
 <h1> Structural Variants Per Contig </h1>
-Below is a plot to help you assess what structural variants were detected by LEVIATHAN. These plots are interactive,
+Below is a plot to help you assess what structural variants were detected by NAIBR. These plots are interactive,
 allowing you to hover over a variant to provide additional information, including the genomic interval in which it occurs and the
 number of haplotag barcodes supporting the variant.
 

src/harpy/reports/NaibrPop.Rmd

@@ -45,11 +45,10 @@ script src = "https://ajax.googleapis.com/ajax/libs/jquery/3.7.1/jquery.min.js"
 ```
 
 ```{r echo = FALSE, warnings = FALSE, message = FALSE}
-#infiles <- snakemake@input[["bedpe"]]
-#fai <- snakemake@input[["fai"]]
-#infiles <- paste0("/home/pdimens/", c("AW","BL"), ".bedpe")
-infiles <- list.files(path = "~", pattern = "*bedpe", full.names = T)
-fai <- "~/test.fai"
+infiles <- snakemake@input[["bedpe"]]
+fai <- snakemake@input[["fai"]]
+#infiles <- list.files(path = "~", pattern = "*bedpe", full.names = T)
+#fai <- "~/test.fai"
 ```
 
 # General Stats