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consistent naming, force tests
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pdimens committed Oct 27, 2023
1 parent ea3b336 commit 6561947
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Showing 3 changed files with 4 additions and 4 deletions.
2 changes: 1 addition & 1 deletion .github/workflows/demux.yml
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Expand Up @@ -53,6 +53,6 @@ jobs:
misc/buildforCI.sh
shell: micromamba-shell {0}

- name: Test harpy demux
- name: harpy demultiplex
run: harpy demultiplex gen1 --file test/demux/Undetermined_S0_L004_I1_001.fastq.gz --samplesheet test/demux/samples.schema
shell: micromamba-shell {0}
4 changes: 2 additions & 2 deletions .github/workflows/preflight.yml
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Expand Up @@ -60,10 +60,10 @@ jobs:
misc/buildforCI.sh
shell: micromamba-shell {0}

- name: Test harpy preflight fastq
- name: harpy preflight fastq
run: harpy preflight fastq -d test/fastq
shell: micromamba-shell {0}

- name: Test harpy preflight bam
- name: harpy preflight bam
run: harpy preflight bam -d test/bam
shell: micromamba-shell {0}
2 changes: 1 addition & 1 deletion .github/workflows/qc.yml
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Expand Up @@ -48,6 +48,6 @@ jobs:
misc/buildforCI.sh
shell: micromamba-shell {0}

- name: Test harpy qc
- name: harpy qc
run: harpy qc -d test/fastq
shell: micromamba-shell {0}

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