swap xml

pdimens · May 2, 2024 · 4ced33c · 4ced33c
1 parent 6a96d46
commit 4ced33c
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/harpy/helperfunctions.py b/src/harpy/helperfunctions.py
@@ -27,7 +27,7 @@ def generate_conda_deps():
         "variants.sv": ["bioconda::leviathan", "bioconda::naibr-plus"],
         "phase" : ["bioconda::hapcut2", "bioconda::whatshap"],
         "simulations" : ["conda-forge::perl", "bioconda::perl-math-random", "bioconda::perl-inline-c", "bioconda::perl-parse-recdescent", "conda-forge::numpy", "bioconda::dwgsim", "alienzj::msort"],
-        "r-env" : ["conda-forge::libxml2", "bioconda::bioconductor-complexheatmap", "conda-forge::r-highcharter", "conda-forge::r-circlize", "r::r-biocircos", "conda-forge::r-dt", "conda-forge::r-flexdashboard", "conda-forge::r-ggplot2", "conda-forge::r-ggridges", "conda-forge::r-plotly", "conda-forge::r-tidyr", "bioconda::r-stitch"]
+        "r-env" : ["conda-forge::r-xml", "bioconda::bioconductor-complexheatmap", "conda-forge::r-highcharter", "conda-forge::r-circlize", "r::r-biocircos", "conda-forge::r-dt", "conda-forge::r-flexdashboard", "conda-forge::r-ggplot2", "conda-forge::r-ggridges", "conda-forge::r-plotly", "conda-forge::r-tidyr", "bioconda::r-stitch"]
     }
     os.makedirs(".harpy_envs", exist_ok = True)
     for i in environ: