fix to match the new script names

pdimens · Jul 22, 2024 · 42a39bd · 42a39bd
1 parent 9a24ae1
commit 42a39bd
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Showing 2 changed files with 7 additions and 7 deletions.
diff --git a/.github/filters.yml b/.github/filters.yml
@@ -51,7 +51,7 @@ bwa: &bwa
   - 'src/harpy/bin/bx_stats.py'
   - 'src/harpy/bin/count_bx.py'
   - 'src/harpy/bin/assign_mi.py'
-  - 'src/harpy/bin/makeWindows.py'
+  - 'src/harpy/bin/make_windows.py'
   - 'test/fastq/**'
 ema: &ema
   - *common
@@ -62,7 +62,7 @@ ema: &ema
   - 'src/harpy/reports/BxCount.Rmd'
   - 'src/harpy/bin/bx_stats.py'
   - 'src/harpy/bin/count_bx.py'
-  - 'src/harpy/bin/makewindows.py'
+  - 'src/harpy/bin/make_windows.py'
   - 'test/fastq/**'
 strobealign: &strobealign
   - *common
@@ -74,23 +74,23 @@ strobealign: &strobealign
   - 'src/harpy/bin/assign_mi.py'
   - 'src/harpy/bin/bx_stats.py'
   - 'src/harpy/bin/count_bx.py'
-  - 'src/harpy/bin/makewindows.py'
+  - 'src/harpy/bin/make_windows.py'
   - 'test/fastq/**'
 mpileup: &mpileup
   - *common
   - *container
   - 'src/harpy/snp.py'
   - 'src/harpy/snakefiles/snp-mpileup.smk'
   - 'src/harpy/reports/BcftoolsStats.Rmd'
-  - 'src/harpy/bin/makewindows.py'
+  - 'src/harpy/bin/make_windows.py'
   - 'test/bam/**'
 freebayes: &freebayes
   - *common
   - *container
   - 'src/harpy/snp.py'
   - 'src/harpy/snakefiles/snp-freebayes.smk'
   - 'src/harpy/reports/BcftoolsStats.Rmd'
-  - 'src/harpy/bin/makewindows.py'
+  - 'src/harpy/bin/make_windows.py'
   - 'test/bam/**'
 impute: &impute
   - *common

diff --git a/src/harpy/snp.py b/src/harpy/snp.py
@@ -102,7 +102,7 @@ def mpileup(inputs, output_dir, regions, genome, threads, populations, ploidy, e
     regtype = validate_regions(regions, genome)
     if regtype == "windows":
         region = Path(f"{workflowdir}/positions.bed").resolve()
-        os.system(f"makeWindows.py -m 1 -i {genome} -o {region} -w {regions}")
+        os.system(f"make_windows.py -m 1 -i {genome} -o {region} -w {regions}")
     elif regtype == "region":
         region = regions
     else:
@@ -202,7 +202,7 @@ def freebayes(inputs, output_dir, genome, threads, populations, ploidy, regions,
     regtype = validate_regions(regions, genome)
     if regtype == "windows":
         region = Path(f"{workflowdir}/positions.bed").resolve()
-        os.system(f"makeWindows.py -m 0 -i {genome} -o {region} -w {regions}")
+        os.system(f"make_windows.py -m 0 -i {genome} -o {region} -w {regions}")
     elif regtype == "region":
         region = regions
     else: