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fix typos
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pdimens committed Aug 1, 2024
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Expand Up @@ -37,7 +37,7 @@ calling structural variants at low depth is challenging, especially with short r
It's recommended to have at least 10X-12X depth to get decent structural variant calls
(definitely read that in a paper that I would like to link here, but I can't seem to find
it). If your data already has a minimum of 10X for each individual, great! Feel free to use
variant callers like `naibr` and `leviathan` to identify structural variants. Hwoever, if
variant callers like `naibr` and `leviathan` to identify structural variants. However, if
you opted to sequence more individuals at lower coverage (lcWGS is often between 0.5-5X),
then calling structural variants in individuals may be a challenge.

Expand All @@ -58,7 +58,7 @@ that as a basis to pool together samples from these groups. As an example, you c
get results like these:
![PCA of Alosa sapidissima (SNPs from low-coverage haplotag dataset)](/static/pca.png)

Given these results, a sensible pooling strategy would be:
Given these results, a sensible pooling strategy may be:
- **Pool 1**: Miramichi samples
- **Pool 2**: Annapolis samples
- **Pool 3**: St_Johns samples
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