Test Harpy Modules

Merge pull request #108 from pdimens/phasereports #187

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Run time

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Job	Run time
Detect File Changes	6s
Build/Cache Container	17m 9s
demux gen1	17m 49s
deconvolve	6m 19s
align EMA	17m 5s
align BWA	9m 10s
harpy extras	0s
impute	19m 17s
freebayes	23m 56s
sv leviathan	15m 53s
mpileup	12m 33s
sv naibr	29m 22s
phase	20m 59s
preflight	8m 20s
qc	14m 15s
simulate linkedreads	15m 18s
simulate variants	33m 1s
align strobe	8m 24s
	4h 28m 56s