Test Harpy Modules

add HPC subcommand and support #125

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Run time

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Job	Run time
Detect File Changes	6s
Build/Cache Container	8m 39s
align EMA	12m 22s
demux gen1	14m 42s
align BWA	14m 50s
harpy extras	0s
freebayes	22m 27s
impute	17m 12s
sv leviathan	15m 56s
align minimap	8m 55s
mpileup	8m 32s
sv naibr	24m 59s
phase	19m 19s
preflight	11m 40s
qc	13m 6s
simulate linkedreads	15m 36s
simulate variants	27m 1s
	3h 55m 22s