fix input names #110

Job	Run time
detect file changes	5s
build harpy and cache container	8m 54s
align BWA	14m 19s
harpy extras	0s
demux gen1	0s
align EMA	12m 53s
freebayes	23m 16s
sv leviathan	15m 5s
impute	0s
align minimap	16m 55s
mpileup	8m 36s
sv naibr	34m 29s
phase	0s
preflight	0s
qc	0s
simulate linkedreads	0s
simulate variants	0s
	2h 14m 32s

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