Skip to content
Test Harpy Modules

Singularity #83

Sign in to view logs

Singularity

Singularity #83

Triggered via pull request May 7, 2024 18:38
@pdimenspdimens
synchronize #77
singularity
Status Cancelled
Total duration 15m 19s
Artifacts 1

tests.yml

on: pull_request
detect file changes
5s
detect file changes
harpy installation
8m 9s
harpy installation
test demux gen1
1m 44s
test demux gen1
test preflight
1m 32s
test preflight
test qc
1m 33s
test qc
test align BWA
1m 45s
test align BWA
test align EMA
1m 45s
test align EMA
test align minimap
1m 32s
test align minimap
test mpileup
1m 44s
test mpileup
test freebayes
1m 45s
test freebayes
test impute
6m 29s
test impute
test phase
1m 36s
test phase
test sv leviathan
6m 28s
test sv leviathan
test sv naibr
6m 29s
test sv naibr
test simulate variants
1m 36s
test simulate variants
test simulate linkedreads
49s
test simulate linkedreads
test harpy extras
0s
test harpy extras
Fit to window
Zoom out
Zoom in

Annotations

34 errors and 4 warnings
test simulate linkedreads
Process completed with exit code 1.
test align minimap
The run was canceled by @pdimens.
test align minimap
The operation was canceled.
test preflight
The run was canceled by @pdimens.
test preflight
The operation was canceled.
test preflight
Process completed with exit code 1.
test qc
The run was canceled by @pdimens.
test qc
Process completed with exit code 1.
test qc
The operation was canceled.
test phase
The run was canceled by @pdimens.
test phase
Process completed with exit code 1.
test phase
Process completed with exit code 1.
test phase
The operation was canceled.
test simulate variants
The run was canceled by @pdimens.
test simulate variants
The operation was canceled.
test simulate variants
Process completed with exit code 1.
test simulate variants
Process completed with exit code 1.
test simulate variants
Process completed with exit code 1.
test demux gen1
The run was canceled by @pdimens.
test demux gen1
The operation was canceled.
test align EMA
The run was canceled by @pdimens.
test align EMA
The operation was canceled.
test freebayes
The run was canceled by @pdimens.
test freebayes
The operation was canceled.
test align BWA
The run was canceled by @pdimens.
test align BWA
The operation was canceled.
test mpileup
The run was canceled by @pdimens.
test mpileup
The operation was canceled.
test sv leviathan
The run was canceled by @pdimens.
test sv leviathan
The operation was canceled.
test sv naibr
The run was canceled by @pdimens.
test sv naibr
The operation was canceled.
test impute
The run was canceled by @pdimens.
test impute
The operation was canceled.
detect file changes
'base' input parameter is ignored when action is triggered by pull request event
test sv leviathan
Runner GitHub Actions 18 did not respond to a cancelation request with 00:05:00.
test sv naibr
Runner GitHub Actions 10 did not respond to a cancelation request with 00:05:00.
test impute
Runner GitHub Actions 14 did not respond to a cancelation request with 00:05:00.

Artifacts

Produced during runtime
Name Size
deps-image Expired
1.2 GB