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Test Harpy Modules

Singularity #78

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Singularity

Singularity #78

Triggered via pull request May 7, 2024 14:57
@pdimenspdimens
synchronize #77
singularity
Status Cancelled
Total duration 21m 9s
Artifacts 1

tests.yml

on: pull_request
detect file changes
6s
detect file changes
harpy installation
8m 25s
harpy installation
test demux gen1
7m 41s
test demux gen1
test preflight
11m 20s
test preflight
test qc
11m 55s
test qc
test align BWA
7m 40s
test align BWA
test align EMA
7m 44s
test align EMA
test align minimap
7m 40s
test align minimap
test mpileup
7m 37s
test mpileup
test freebayes
7m 39s
test freebayes
test impute
12m 22s
test impute
test phase
12m 22s
test phase
test sv leviathan
7m 27s
test sv leviathan
test sv naibr
12m 22s
test sv naibr
test simulate variants
12m 22s
test simulate variants
test simulate linkedreads
7m 36s
test simulate linkedreads
test harpy extras
0s
test harpy extras
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Annotations

25 errors and 5 warnings
test sv leviathan
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test sv leviathan
The operation was canceled.
test sv leviathan
Process completed with exit code 1.
test simulate linkedreads
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test simulate linkedreads
The operation was canceled.
test freebayes
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test freebayes
The operation was canceled.
test align BWA
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test align BWA
The operation was canceled.
test mpileup
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test mpileup
The operation was canceled.
test align minimap
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test align minimap
The operation was canceled.
test demux gen1
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test demux gen1
The operation was canceled.
test align EMA
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test align EMA
The operation was canceled.
test preflight
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test qc
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test impute
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test impute
The operation was canceled.
test sv naibr
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test phase
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test simulate variants
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test simulate variants
The operation was canceled.
detect file changes
'base' input parameter is ignored when action is triggered by pull request event
test impute
Runner GitHub Actions 7 did not respond to a cancelation request with 00:05:00.
test sv naibr
Runner GitHub Actions 4 did not respond to a cancelation request with 00:05:00.
test simulate variants
Runner GitHub Actions 5 did not respond to a cancelation request with 00:05:00.
test phase
Runner GitHub Actions 13 did not respond to a cancelation request with 00:05:00.

Artifacts

Produced during runtime
Name Size
deps-image Expired
1.2 GB