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Test Harpy Modules

Singularity #76

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Singularity

Singularity #76

Triggered via pull request May 6, 2024 20:16
@pdimenspdimens
synchronize #77
singularity
Status Cancelled
Total duration 21m 42s
Artifacts 1

tests.yml

on: pull_request
detect file changes
6s
detect file changes
harpy installation
8m 5s
harpy installation
test demux gen1
8m 39s
test demux gen1
test preflight
13m 17s
test preflight
test qc
13m 18s
test qc
test align BWA
8m 36s
test align BWA
test align EMA
8m 39s
test align EMA
test align minimap
8m 33s
test align minimap
test mpileup
8m 33s
test mpileup
test freebayes
8m 36s
test freebayes
test impute
12m 31s
test impute
test phase
13m 18s
test phase
test sv leviathan
13m 17s
test sv leviathan
test sv naibr
13m 18s
test sv naibr
test simulate variants
27s
test simulate variants
test simulate linkedreads
8m 32s
test simulate linkedreads
test harpy extras
0s
test harpy extras
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31 errors and 6 warnings
test simulate variants
Process completed with exit code 1.
test simulate variants
Process completed with exit code 1.
test simulate variants
Process completed with exit code 1.
test simulate variants
Process completed with exit code 1.
test mpileup
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test mpileup
The operation was canceled.
test align minimap
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test align minimap
The operation was canceled.
test simulate linkedreads
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test simulate linkedreads
The operation was canceled.
test freebayes
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test freebayes
The operation was canceled.
test align BWA
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test align BWA
The operation was canceled.
test align EMA
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test align EMA
The operation was canceled.
test demux gen1
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test demux gen1
The operation was canceled.
test impute
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test impute
The operation was canceled.
test impute
Process completed with exit code 1.
test sv leviathan
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test sv leviathan
The operation was canceled.
test sv naibr
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test sv naibr
The operation was canceled.
test phase
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test phase
The operation was canceled.
test preflight
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test preflight
The operation was canceled.
test qc
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test qc
The operation was canceled.
detect file changes
'base' input parameter is ignored when action is triggered by pull request event
test sv leviathan
Runner GitHub Actions 16 did not respond to a cancelation request with 00:05:00.
test sv naibr
Runner GitHub Actions 6 did not respond to a cancelation request with 00:05:00.
test phase
Runner GitHub Actions 3 did not respond to a cancelation request with 00:05:00.
test preflight
Runner GitHub Actions 19 did not respond to a cancelation request with 00:05:00.
test qc
Runner GitHub Actions 1 did not respond to a cancelation request with 00:05:00.

Artifacts

Produced during runtime
Name Size
deps-image Expired
1.2 GB