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Test Harpy Modules

Singularity #71

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Singularity

Singularity #71

Triggered via pull request May 6, 2024 18:43
@pdimenspdimens
synchronize #77
singularity
Status Failure
Total duration 32m 22s
Artifacts –

tests.yml

on: pull_request
detect file changes
6s
detect file changes
harpy installation
26s
harpy installation
test demux gen1
18m 9s
test demux gen1
test preflight
10m 51s
test preflight
test qc
15m 49s
test qc
test align BWA
17m 49s
test align BWA
test align EMA
15m 44s
test align EMA
test align minimap
12m 7s
test align minimap
test mpileup
11m 48s
test mpileup
test freebayes
24m 26s
test freebayes
test impute
20m 14s
test impute
test phase
20m 50s
test phase
test sv leviathan
17m 51s
test sv leviathan
test sv naibr
26m 36s
test sv naibr
test simulate variants
34s
test simulate variants
test simulate linkedreads
18m 54s
test simulate linkedreads
test harpy extras
0s
test harpy extras
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8 errors and 1 warning
test simulate variants
Process completed with exit code 1.
test simulate variants
Process completed with exit code 1.
test simulate variants
Process completed with exit code 1.
test simulate variants
Process completed with exit code 1.
test preflight
Process completed with exit code 1.
test phase
Process completed with exit code 1.
test phase
Process completed with exit code 1.
test phase
Process completed with exit code 1.
detect file changes
'base' input parameter is ignored when action is triggered by pull request event