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Test Harpy Modules

Singularity #68

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Singularity

Singularity #68

Triggered via pull request May 6, 2024 18:08
@pdimenspdimens
synchronize #77
singularity
Status Cancelled
Total duration 17m 33s
Artifacts –

tests.yml

on: pull_request
detect file changes
6s
detect file changes
harpy installation
28s
harpy installation
test demux gen1
6m 4s
test demux gen1
test preflight
6m 15s
test preflight
test qc
26s
test qc
test align BWA
6m 9s
test align BWA
test align EMA
6m 12s
test align EMA
test align minimap
6m 3s
test align minimap
test mpileup
6m 55s
test mpileup
test freebayes
6m 57s
test freebayes
test impute
7m 58s
test impute
test phase
9m 56s
test phase
test sv leviathan
7m 53s
test sv leviathan
test sv naibr
11m 39s
test sv naibr
test simulate variants
11m 39s
test simulate variants
test simulate linkedreads
6m 12s
test simulate linkedreads
test harpy extras
0s
test harpy extras
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31 errors and 3 warnings
test qc
Process completed with exit code 1.
test qc
Process completed with exit code 1.
test align minimap
Process completed with exit code 1.
test demux gen1
Process completed with exit code 1.
test align BWA
Process completed with exit code 1.
test align EMA
Process completed with exit code 1.
test simulate linkedreads
Process completed with exit code 1.
test preflight
Process completed with exit code 1.
test preflight
Process completed with exit code 1.
test freebayes
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test freebayes
The operation was canceled.
test mpileup
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test mpileup
The operation was canceled.
test sv leviathan
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test sv leviathan
Process completed with exit code 1.
test sv leviathan
Process completed with exit code 1.
test impute
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test impute
Process completed with exit code 1.
test impute
Process completed with exit code 1.
test phase
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test phase
Process completed with exit code 1.
test phase
Process completed with exit code 1.
test phase
Process completed with exit code 1.
test simulate variants
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test simulate variants
Process completed with exit code 1.
test simulate variants
Process completed with exit code 1.
test sv naibr
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test sv naibr
Process completed with exit code 1.
test sv naibr
Process completed with exit code 1.
test sv naibr
Process completed with exit code 1.
test sv naibr
Process completed with exit code 1.
detect file changes
'base' input parameter is ignored when action is triggered by pull request event
test simulate variants
Runner GitHub Actions 17 did not respond to a cancelation request with 00:05:00.
test sv naibr
Runner GitHub Actions 13 did not respond to a cancelation request with 00:05:00.