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Test Harpy Modules

Singularity #67

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Singularity

Singularity #67

Triggered via pull request May 6, 2024 18:06
@pdimenspdimens
synchronize #77
singularity
Status Cancelled
Total duration 6m 54s
Artifacts –

tests.yml

on: pull_request
detect file changes
6s
detect file changes
harpy installation
21s
harpy installation
test demux gen1
24s
test demux gen1
test preflight
6m 16s
test preflight
test qc
35s
test qc
test align BWA
1m 30s
test align BWA
test align EMA
1m 29s
test align EMA
test align minimap
1m 28s
test align minimap
test mpileup
1m 29s
test mpileup
test freebayes
1m 30s
test freebayes
test impute
6m 13s
test impute
test phase
6m 15s
test phase
test sv leviathan
6m 13s
test sv leviathan
test sv naibr
6m 15s
test sv naibr
test simulate variants
6m 13s
test simulate variants
test simulate linkedreads
1m 31s
test simulate linkedreads
test harpy extras
0s
test harpy extras
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27 errors and 7 warnings
test demux gen1
Process completed with exit code 2.
test qc
Process completed with exit code 1.
test qc
Process completed with exit code 1.
test align minimap
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test align minimap
The operation was canceled.
test freebayes
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test align EMA
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test freebayes
The operation was canceled.
test align EMA
The operation was canceled.
test align BWA
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test align BWA
The operation was canceled.
test mpileup
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test mpileup
The operation was canceled.
test simulate linkedreads
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test simulate linkedreads
The operation was canceled.
test phase
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test phase
The operation was canceled.
test sv naibr
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test sv naibr
The operation was canceled.
test sv leviathan
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test sv leviathan
The operation was canceled.
test impute
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test impute
The operation was canceled.
test preflight
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test preflight
The operation was canceled.
test simulate variants
Canceling since a higher priority waiting request for 'Test Harpy Modules-singularity' exists
test simulate variants
The operation was canceled.
detect file changes
'base' input parameter is ignored when action is triggered by pull request event
test phase
Runner GitHub Actions 3 did not respond to a cancelation request with 00:05:00.
test sv naibr
Runner GitHub Actions 1 did not respond to a cancelation request with 00:05:00.
test sv leviathan
Runner GitHub Actions 20 did not respond to a cancelation request with 00:05:00.
test impute
Runner GitHub Actions 18 did not respond to a cancelation request with 00:05:00.
test preflight
Runner GitHub Actions 12 did not respond to a cancelation request with 00:05:00.
test simulate variants
Runner GitHub Actions 6 did not respond to a cancelation request with 00:05:00.