Test Harpy Modules

fix how biallelic outputs #45

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Run time

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Job	Run time
detect file changes	9s
harpy installation	30s
test align EMA	3m 52s
test demux gen1	1m 33s
test harpy extras	0s
test align BWA	3m 23s
test freebayes	2m 17s
test impute	3m 49s
test sv leviathan	2m 47s
test align minimap	2m 40s
test mpileup	2m 22s
test sv naibr	3m 1s
test phase	1m 48s
test qc	2m 21s
test simulate linkedreads	9m 58s
test simulate variants	1m 15s
	41m 45s