Test Harpy Modules

Improved singleton counting #464

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Run time

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Job	Run time
Detect File Changes	5s
Build/Cache Container	13m 34s
deconvolve	10m 58s
metassembly	46m 23s
demux gen1	32m 39s
align BWA	16m 15s
align EMA	20m 59s
harpy extras	2m 33s
impute	30m 37s
freebayes	40m 39s
sv leviathan	26m 11s
mpileup	16m 0s
sv naibr	41m 9s
phase	36m 20s
preflight	12m 7s
qc	20m 0s
simulate linkedreads	24m 15s
simulate variants	46m 1s
align strobe	14m 32s
	7h 31m 17s