Test Harpy Modules

Merge pull request #162 from pdimens/haplotag_lrsims #418

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Run time

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Job	Run time
Detect File Changes	9s
Build/Cache Container	13m 42s
align BWA	20m 38s
deconvolve	10m 59s
metassembly	51m 5s
demux gen1	11m 11s
align EMA	22m 0s
harpy extras	0s
freebayes	41m 33s
impute	32m 57s
sv leviathan	24m 43s
phase	37m 1s
sv naibr	39m 31s
mpileup	16m 57s
preflight	12m 4s
qc	22m 4s
simulate linkedreads	45m 43s
simulate variants	45m 35s
align strobe	14m 12s
	7h 42m 4s