Test Harpy Modules

replace with check_fasta #213

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Run time

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Job	Run time
Detect File Changes	12s
Build/Cache Container	9m 10s
align BWA	5m 20s
deconvolve	5m 19s
align EMA	7m 25s
demux gen1	16m 49s
freebayes	23m 16s
harpy extras	0s
impute	18m 50s
sv leviathan	16m 9s
mpileup	3m 40s
sv naibr	26m 22s
phase	21m 22s
preflight	8m 41s
qc	12m 23s
simulate linkedreads	16m 19s
simulate variants	27m 20s
align strobe	8m 47s
	3h 47m 24s