Test Harpy Modules

Merge pull request #115 from pdimens/DTfilenames #212

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Run time

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Job	Run time
Detect File Changes	6s
Build/Cache Container	9m 20s
align BWA	9m 39s
align EMA	12m 44s
deconvolve	0s
demux gen1	0s
harpy extras	0s
freebayes	23m 29s
impute	37m 50s
sv leviathan	0s
mpileup	8m 48s
phase	20m 38s
sv naibr	0s
preflight	7m 31s
qc	0s
simulate linkedreads	0s
simulate variants	0s
align strobe	8m 53s
	2h 18m 58s