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Using ICGC data portal
Irzam Sarfraz edited this page Jun 18, 2023
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Find data Select samples Download manifest file Run SCORE CLIENT and input manifest file Download
install docker
how to download? docker pull overture/score
run score client with your access token (this token comes from ICGC) docker run -it -e ACCESSTOKEN="YourToken" -e STORAGE_PROFILE=collab -v yourLocalFolder overture/score
download from manifest bin/score-client download --manifest manifest.collaboratory.1678287089616.tsv --output-dir data
copy from docker to local? docker cp beac91ac413a:/score-client/data/aff5793b-3197-4d1d-bf0a-9b0ded5f2937.consensus.20161006.somatic.indel.vcf.gz .