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| name: Lecture Notes Quarto Render Bilingual Book Push Other Repos and GitLab | |
| on: | |
| workflow_dispatch: | |
| push: | |
| jobs: | |
| lecture-notes: | |
| if: "contains(github.event.head_commit.message, 'lecture') && !contains(github.event.head_commit.message, 'merge') && !contains(github.event.head_commit.message, 'WIP')" | |
| runs-on: ubuntu-latest | |
| continue-on-error: true | |
| env: | |
| RENV_PATHS_ROOT: ~/.local/share/renv | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: "actions checkout" | |
| uses: actions/checkout@v3 | |
| - name: "Setup pandoc" | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: "Setup Quarto" | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| - name: "Install curl for Bioconductor" | |
| run: | | |
| sudo apt -y install libcurl4-openssl-dev | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Setup renv | |
| uses: r-lib/actions/setup-renv@v2 | |
| - name: Set up Quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| with: | |
| tinytex: true | |
| - uses: r-lib/actions/setup-tinytex@v2 | |
| - run: tlmgr --version | |
| - name: Install additional LaTeX packages | |
| run: | | |
| tlmgr install titlesec | |
| tlmgr install svg | |
| tlmgr install transparent | |
| tlmgr install tikzfill | |
| tlmgr install sidenotes | |
| tlmgr install marginnote | |
| tlmgr install changepage | |
| tlmgr list --only-installed | |
| - name: Restore R package cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install R dependencies | |
| run: | | |
| if (!requireNamespace("remotes", quietly = TRUE)) {install.packages("remotes", dependencies = TRUE, quiet = TRUE, verbose = FALSE)} | |
| remotes::install_deps(dependencies = TRUE) | |
| if (!requireNamespace("renv", quietly = TRUE)) install.packages("renv", dependencies = TRUE, quiet = TRUE, verbose = FALSE) | |
| renv::restore() | |
| if (!requireNamespace("fs", quietly = TRUE)) install.packages("fs", dependencies = TRUE, quiet = TRUE, verbose = FALSE) | |
| if (!requireNamespace("quarto", quietly = TRUE)) install.packages("quarto", dependencies = TRUE, quiet = TRUE, verbose = FALSE) | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: "Render lecture-notes" | |
| shell: Rscript {0} | |
| run: | | |
| # filestorender <- list.files(path = "./lecture-notes", pattern = ".qmd", full.names = TRUE, recursive = TRUE) | |
| # purrr::map(.x = filestorender, .f= quarto::quarto_render, output_format = 'gfm') | |
| # purrr::map(.x = filestorender, .f= quarto::quarto_render, output_format = 'revealjs') | |
| # purrr::map(.x = filestorender, .f= quarto::quarto_render, output_format = 'all') | |
| quarto::quarto_render(input = "./lecture-notes/*.qmd", as_job = FALSE, quiet = TRUE) | |
| # quarto::quarto_render(input = filestorender, output_format = 'gfm', as_job = FALSE, quiet = TRUE) | |
| # quarto::quarto_render(input = filestorender, output_format = 'revealjs', as_job = FALSE, quiet = TRUE) | |
| # quarto::quarto_render(input = filestorender, output_format = 'all', as_job = FALSE) | |
| - name: "Prepare lecture-notes readme" | |
| shell: Rscript {0} | |
| run: | | |
| md_files <- list.files(path = './lecture-notes/', pattern = '*\\.md', full.names = FALSE, recursive = TRUE) | |
| md_files <- md_files[!grepl(pattern = 'README', x = md_files)] | |
| md_files <- gsub(pattern = '\\.md', replacement = '', x = md_files) | |
| md_files_list <- purrr::map(.x = md_files, .f = ~ paste0('[', .x , '](./', .x , '.md)\n')) | |
| readme_text <- paste0(unlist(md_files_list), collapse = "\n\n") | |
| timestamp_text <- as.character(Sys.time()) | |
| readme_text <- paste0('# Patoloji Ders Notları \n\n', timestamp_text, '\n\n', readme_text) | |
| if (file.exists('./lecture-notes/README.md')){fs::file_delete(path = './lecture-notes/README.md')} | |
| writeLines(text = readme_text, con = './lecture-notes/README.md') | |
| # - name: "Prepare patoloji-ders-notlari" | |
| # shell: Rscript {0} | |
| # run: | | |
| # # if (dir.exists(paths = "./lecture-notes")) { fs::dir_copy(path = "./lecture-notes", new_path = "./ders-notlari", overwrite = TRUE) } | |
| # # filestorender2 <- list.files(path = "./ders-notlari", pattern = ".qmd", full.names = TRUE, recursive = TRUE) | |
| # # quarto::quarto_render(input = filestorender2, output_format = 'revealjs', as_job = FALSE, quiet = TRUE) | |
| # # md_files2 <- list.files(path = './lecture-notes', pattern = '\\.md', full.names = TRUE) | |
| # # fs::file_copy(path = md_files2, new_path = "./ders-notlari/", overwrite = TRUE) | |
| - name: Commit results to main branch | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Actions" | |
| git add . | |
| git commit -m "CI added changes `date +'%Y-%m-%d %H:%M:%S'`" || echo "No changes to commit" | |
| git push origin || echo "No changes to commit" | |
| - name: Push changes # push the output folder to your repo | |
| uses: ad-m/github-push-action@master | |
| with: | |
| branch: main | |
| github_token: ${{ secrets.API_TOKEN_GITHUB }} | |
| # WORKFLOW_GITHUB_TOKEN | |
| force: true | |
| - name: Pushes to patoloji-ders-notlari | |
| uses: cpina/github-action-push-to-another-repository@main | |
| env: | |
| API_TOKEN_GITHUB: ${{ secrets.API_TOKEN_GITHUB }} | |
| with: | |
| source-directory: 'lecture-notes' | |
| destination-github-username: 'sbalci' | |
| destination-repository-name: 'patoloji-ders-notlari' | |
| user-email: [email protected] | |
| target-branch: main |