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Hi, Does pydeseq2 support single cell data now? such get the differential expressing genes of each cluster/cell_type?
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Hi @wangjiawen2013! Yes, it's possible to analyse single-cell data with pydeseq2 + decoupleR and/or scanpy.
See this decoupleR vignette or this youtube tutorial.
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Hi,
Does pydeseq2 support single cell data now? such get the differential expressing genes of each cluster/cell_type?
The text was updated successfully, but these errors were encountered: