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  1. owkin/PyDESeq2 owkin/PyDESeq2 Public

    A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

    Python 604 69

  2. MissingDataOT MissingDataOT Public

    A Pytorch implementation of missing data imputation using optimal transport.

    Jupyter Notebook 94 14

  3. TROT TROT Public

    A python implementation of discrete optimal transport with a Tsallis entropy regularization.

    Jupyter Notebook 12 5

  4. owkin/fedpydeseq2 owkin/fedpydeseq2 Public

    A federated implementation of PyDESeq2, based on Substra.

    Python 6