Merge branch 'release/0.1.3'

.github/workflows/pkgdown.yaml

@@ -57,6 +57,7 @@ jobs:
           mv $TEMP_DIR/external/example_external_data $TEMP_DIR/external/data
           cp -R information/AMAP $TEMP_DIR/external/
           mv $TEMP_DIR/external/AMAP $TEMP_DIR/external/information
+          mv $TEMP_DIR/external/information/README*.* $TEMP_DIR/external/
           cd $TEMP_DIR
           zip -r $WORK_DIR/docs/external.zip external
           cd $WORK_DIR
@@ -69,6 +70,7 @@ jobs:
           mv $TEMP_DIR/ospar/example_OSPAR $TEMP_DIR/ospar/data
           cp -R information/OSPAR_2022 $TEMP_DIR/ospar/
           mv $TEMP_DIR/ospar/OSPAR_2022 $TEMP_DIR/ospar/information
+          mv $TEMP_DIR/ospar/information/README*.* $TEMP_DIR/ospar/
           cd $TEMP_DIR
           zip -r $WORK_DIR/docs/ospar.zip ospar
           cd $WORK_DIR
@@ -81,6 +83,7 @@ jobs:
           mv $TEMP_DIR/helcom/example_HELCOM $TEMP_DIR/helcom/data
           cp -R information/HELCOM_2023 $TEMP_DIR/helcom/
           mv $TEMP_DIR/helcom/HELCOM_2023 $TEMP_DIR/helcom/information
+          mv $TEMP_DIR/helcom/information/README*.* $TEMP_DIR/helcom/
           cd $TEMP_DIR
           zip -r $WORK_DIR/docs/helcom.zip helcom
           cd $WORK_DIR

CONTRIBUTING.md

@@ -107,7 +107,7 @@ R CMD check --no-manual harsat_x.y.z+1.tar.gz
 git add DESCRIPTION
 git commit -m "Updated version to x.y.z+1
 git flow release finish x.y.z+1
-git checkout master
+git checkout main
 git push
 git push --tags
 git push upstream

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: harsat
 Title: Harmonized Regional Seas Assessment Tool
-Version: 0.1.2
+Version: 0.1.3.1003
 Authors@R: c(
     person(given = "Arctic Monitoring and Assessment Programme (AMAP)", email = "[email protected]", role = c("cph", "fnd", "aut")),
     person(given = "Helsinki Commission (HELCOM)", email = "[email protected]", role = c("cph", "fnd", "aut")),
@@ -36,7 +36,9 @@ Imports:
   stringr,
   tibble,
   tidyr,
-  sf
+  sf,
+  digest,
+  readxl
 Suggests: 
   knitr,
   rmarkdown,

R/graphics_functions.R

@@ -134,10 +134,11 @@ plot_assessment <- function(
     # get file name from id, and add country and station name 
     # for easier identification
 
-    output_id <- gsub(
-      series$station_code, 
+    output_id <- sub(
+      series$station_code,
       paste(series$station_code, series$country, series$station_name), 
-      id
+      id,
+      fixed=TRUE
     )