Repositories list

• RiboMiner

  Public
  a toolset for mining multi-dimensional features of the translatome with ribosome profiling data

  co-translationribosome-profiling-dataribosome-stalling-events+ 1metagene-analysis

  Python

  •

  GNU General Public License v3.0

  •8•14•1•0•Updated Nov 25, 2024Nov 25, 2024

• SCASL

  Public
  single-cell clustering based on alternative splicing landscapes

  Python

  •

  Apache License 2.0

  •3•15•7•0•Updated Mar 20, 2024Mar 20, 2024

• RocA

  Public
  Reanalysis of ribosome profiling datasets reveals a novel function of rocaglamide A in perturbing the dynamics of translation elongation via eIF4A

  ribosome-profilingrocatranslatome

  Python

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Dec 28, 2022Dec 28, 2022

• DeepLinc

  Public
  De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data

  Python

  •

  MIT License

  •7•15•5•0•Updated Oct 11, 2022Oct 11, 2022

• RiboCode

  Public
  release version

  bioinformaticsorfsribosome-profiling+ 1peptides

  Python

  •

  MIT License

  •15•48•33•0•Updated Jul 29, 2022Jul 29, 2022

• xtail

  Public
  Genome-wide assessment of differential translations with ribosome profiling data

  R

  •

  GNU General Public License v3.0

  •18•18•18•0•Updated Apr 7, 2022Apr 7, 2022

• cscMap

  Public
  cscMap is a bioinformatics pipeline to search for the RNA chimeras resulted from fusions of the transcripts encoded by the two opposite DNA strands.

  Python

  •3•4•4•0•Updated Jun 23, 2021Jun 23, 2021

• RPF-count-CDS

  Public
  Counting the RPF reads map to CDS region

  Python

  •

  MIT License

  •3•0•0•0•Updated Feb 17, 2020Feb 17, 2020

• ORFcalling

  Public
  A tutorial review of some methods for ORF calling

  ribocode

  Python

  •

  GNU General Public License v3.0

  •3•4•0•0•Updated Dec 14, 2017Dec 14, 2017