metagentools

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8 repositories

VStrains
Public
VStrains is a de novo approach for reconstructing strains from viral quasispecies.
viral-metagenomics short-reads
Python
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MIT License
•6•23•1•0•Updated Nov 24, 2024Nov 24, 2024
gbintk
Public
🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit
bioinformatics metagenomics assembly-graph contigs metagenomic-binning
Python
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GNU General Public License v3.0
•5•8•0•0•Updated Oct 2, 2024Oct 2, 2024
MetaCoAG
Public
🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
metagenomics binning contigs assembly-graphs
Python
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GNU General Public License v3.0
•7•59•12•0•Updated Sep 26, 2024Sep 26, 2024
GraphBin2
Public
☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
metagenomics binning contigs assembly-graphs overlapped-binning
Python
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BSD 3-Clause "New" or "Revised" License
•3•33•7•0•Updated Sep 26, 2024Sep 26, 2024
metagenomic_binning_review
Public
Code used to analyse and plot metadata of metagenomic binning tools
Jupyter Notebook
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MIT License
•1•11•0•0•Updated Aug 22, 2024Aug 22, 2024
GraphBin
Public
✨🧬 Refined binning of metagenomic contigs using assembly graphs
metagenomics binning assembly-graph label-propagation contigs
Python
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BSD 3-Clause "New" or "Revised" License
•7•90•5•0•Updated Aug 19, 2024Aug 19, 2024
ConDiGA
Public
🗂️🧬 Contigs directed gene annotation for accurate protein sequence database construction in metaproteomics
Python
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MIT License
•1•5•2•0•Updated Jul 7, 2024Jul 7, 2024
metagenomic-database-utilities
Public
Scripts used to create metagenomic databases for metaproteomic analysis
Jupyter Notebook
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BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Feb 6, 2024Feb 6, 2024