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@lehtiolab Lehtiö lab

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    19 repositories

    • lehtiolab.github.io

      Public
      Code & development space for producing new lehtiolab website
      JavaScript
      •0•0•4•0•Updated Nov 26, 2024Nov 26, 2024

    • lehtiodocs

      Public
      0•0•2•0•Updated Nov 26, 2024Nov 26, 2024

    • kantele

      Public
      Lab proteomics raw and search data management
      Python
      •1•2•22•1•Updated Nov 25, 2024Nov 25, 2024

    • nf-msconvert

      Public
      Leverages proteowizard's msconvert in a nextflow workflow
      Nextflow
      •
      MIT License
      •1•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • ddamsproteomics

      Public
      A Nextflow MS DDA proteomics pipeline
      Nextflow
      •
      MIT License
      •5•3•8•1•Updated Nov 5, 2024Nov 5, 2024

    • static-resources

      Public
      Resources that are unlikely to change often, such as configs, test, or infrastructure data
      MIT License
      •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • MTBP_LC

      Public
      R
      •
      MIT License
      •2•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • nf-helaqc_refine

      Public
      Lehtiö lab analysis workflows
      Nextflow
      •
      MIT License
      •4•5•0•0•Updated Oct 10, 2024Oct 10, 2024

    • nf-labelcheck

      Public
      Proteomics nextflow labelcheck pipeline with report
      Nextflow
      •
      MIT License
      •1•1•1•0•Updated Sep 25, 2024Sep 25, 2024

    • proteogenomics-analysis-workflow

      Public
      IPAW: a Nextflow workflow for proteogenomics
      Python
      •9•25•7•1•Updated Aug 8, 2024Aug 8, 2024

    • msstitch

      Public
      MS proteomics post-processing utilities
      Python
      •
      MIT License
      •3•5•0•0•Updated May 28, 2024May 28, 2024

    • meltmatch

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 20, 2024Mar 20, 2024

    • instruments

      Public
      0•0•12•0•Updated Feb 9, 2024Feb 9, 2024

    • old_website

      Public
      Lehtiolab website
      HTML
      •
      MIT License
      •3•1•0•0•Updated Jul 8, 2023Jul 8, 2023

    • verkstad_server

      Public
      Server module for the alternative mass spec maintenance app. Runs in a docker container. Förstås.
      nodejsdockersqliteproteomicsspectrometermasspec
      Vue
      •0•1•1•18•Updated Feb 24, 2023Feb 24, 2023

    • verkstad_client

      Public
      The alternative ToDo app, optimized for proteomics mass spectrometer maintenance.
      vueproteomicstodoappspectrometer
      Vue
      •
      MIT License
      •0•6•1•25•Updated Jan 3, 2023Jan 3, 2023

    • Code-Availability

      Public
      Code availability for Lehtiö lab papers
      R
      •
      MIT License
      •6•3•1•0•Updated Jul 1, 2021Jul 1, 2021

    • nf-deqms

      Public
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Nov 18, 2020Nov 18, 2020

    • tools-galaxy

      Public
      Lehtiö proteomics lab misc tools
      R
      •
      MIT License
      •0•0•0•0•Updated Oct 18, 2017Oct 18, 2017