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    20 repositories

    • DISSECT

      Public
      Deep semi-supervised complete cell deconvolution https://imsb-uke.github.io/DISSECT/
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated Nov 9, 2024Nov 9, 2024

    • Seumetry

      Public
      R Toolkit for Flow- and Mass Cytometry
      HTML
      •
      MIT License
      •0•2•0•0•Updated Oct 7, 2024Oct 7, 2024

    • nichepca

      Public
      Python
      •
      MIT License
      •1•1•1•0•Updated Oct 4, 2024Oct 4, 2024

    • MAXOMOD_Pipeline

      Public
      Reproducible analysis pipeline for the MAXOMOD project: Multiomic ALS signatures highlight sex differences and molecular subclusters and identify the MAPK pathway as therapeutic target
      R
      •
      MIT License
      •4•7•0•0•Updated Sep 26, 2024Sep 26, 2024

    • ANCA-GN_transcriptomics

      Public
      Contains code to analyse the data from the paper: Immune profiling-based targeting of pathogenic T cells with ustekinumab in ANCA-associated glomerulonephritis
      Jupyter Notebook
      •
      MIT License
      •1•3•0•0•Updated Sep 21, 2024Sep 21, 2024

    • Phenylketonuria

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Aug 3, 2024Aug 3, 2024

    • epigenetic-neural-glioblastoma

      Public
      Jupyter Notebook
      •
      MIT License
      •0•5•0•0•Updated Jul 10, 2024Jul 10, 2024

    • pcai

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Jul 1, 2024Jul 1, 2024

    • scGAN

      Public
      Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks
      Python
      •
      MIT License
      •25•77•0•0•Updated May 27, 2024May 27, 2024

    • discern

      Public
      Deep Single Cell Expression ReconstructioN for improved cell clustering and cell subtype and state detection
      Jupyter Notebook
      •
      MIT License
      •3•3•0•0•Updated Feb 7, 2024Feb 7, 2024

    • deconvolution

      Public
      Runs deconvolution methods included in the DISSECT manuscript
      Jupyter Notebook
      •
      MIT License
      •0•0•1•0•Updated Feb 5, 2024Feb 5, 2024

    • TCRs-pMHC

      Public
      Datasets containing CDR3 Beta sequences and peptide sequences, with a true label indication whether the combination binds or not.
      1•2•0•0•Updated Sep 11, 2023Sep 11, 2023

    • exsrrf_analyses

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Apr 4, 2023Apr 4, 2023

    • DeePSC

      Public
      Python
      •0•1•0•0•Updated Oct 20, 2022Oct 20, 2022

    • dcsurv

      Public
      Discrete Calibrated Survival
      Jupyter Notebook
      •
      MIT License
      •1•4•0•0•Updated Jun 23, 2022Jun 23, 2022

    • ecarenet

      Public
      Python
      •
      MIT License
      •1•3•0•0•Updated Nov 24, 2021Nov 24, 2021

    • rna_augment

      Public
      Jupyter Notebook
      •
      MIT License
      •1•1•1•1•Updated Aug 28, 2021Aug 28, 2021

    • bias-transfer-microscopy

      Public
      A repository containing the code for the paper "Deep learning-based bias transfer for medical immunofluorescent microscopy images"
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 3, 2021Aug 3, 2021

    • podometric_u_net

      Public
      Deep learning-based molecular morphometrics for kidney biopsies
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 23, 2020Dec 23, 2020

    • scaden

      Public
      Repository of the Scaden tool for cell type deconvolution of RNA-seq data.
      Python
      •
      MIT License
      •26•2•0•0•Updated Mar 10, 2020Mar 10, 2020