Repositories list

• Phase2.2.bacterial_infections

  Public
  Analysis of the bacterial infections trends in the children population

  R

  •

  Apache License 2.0

  •1•1•0•0•Updated Nov 26, 2024Nov 26, 2024

• website

  Public
  Repository for covidclinical.net website.

  visualizationjekyllvega-lite+ 4altairgehlenborglabcovid-194ce

  HTML

  •

  MIT License

  •4•3•0•5•Updated Aug 1, 2024Aug 1, 2024

• Phase2.2.kawasaki_ad

  Public
  R

  •

  Apache License 2.0

  •1•1•0•0•Updated May 31, 2024May 31, 2024

• Phase2.1NeuroAnalysis

  Public
  Analysis of "Neurological diagnoses in hospitalized COVID-19 patients associated with adverse outcomes: a multinational cohort study"

  R

  •1•2•0•0•Updated Nov 16, 2023Nov 16, 2023

• Version3SqlDataExtraction

  Public
  SQL and documentation to extract 4CE Version 3 local patient-level and shared aggregate files.

  TSQL

  •

  Apache License 2.0

  •1•1•1•0•Updated Apr 27, 2023Apr 27, 2023

• Phase2.2MISCRPackage

  Public
  R

  •

  Apache License 2.0

  •1•2•0•0•Updated Apr 19, 2023Apr 19, 2023

• visualization-notebooks

  Public
  Jupyter Notebooks and other code for 4CE data visualizations.

  visualizationggplot2shiny+ 8i2b2gehlenborglabpic-surecovid-194cevega-litejupyter-notebooks+ 1

  Jupyter Notebook

  •

  MIT License

  •4•13•0•0•Updated Jan 25, 2023Jan 25, 2023

• ARDS_aggregated_data_Public

  Public
  1•1•0•0•Updated Dec 4, 2022Dec 4, 2022

• Phase2.1NeuroRPackage

  Public
  R Package to run statistical analyses for COVID-19 patients with neurological conditions.

  R

  •5•3•0•0•Updated Nov 29, 2022Nov 29, 2022

• PhaseX.2QualityControlRpackage

  Public
  Generate QC reports for 4CE phase 1.2 and phase 2.2 data

  R

  •

  GNU General Public License v3.0

  •1•2•0•0•Updated Oct 21, 2022Oct 21, 2022

• Phase2.2.psy_peds_trends

  Public
  R

  •

  Apache License 2.0

  •2•2•0•0•Updated Oct 18, 2022Oct 18, 2022

• Phase2.1AKIRPackage

  Public
  R Package to run statistical analyses for COVID-19 patients with acute kidney injury.

  kidneycovid-19aki

  R

  •4•2•0•0•Updated Aug 25, 2022Aug 25, 2022

• PhaseX.2SqlDataExtraction

  Public
  SQL and documentation to extract 4CE Phase 1.2 and 2.2 data files.

  PLpgSQL

  •

  Apache License 2.0

  •6•6•0•0•Updated Aug 15, 2022Aug 15, 2022

• Phase2.2.MISC

  Public
  R

  •

  Apache License 2.0

  •1•1•0•0•Updated Jul 7, 2022Jul 7, 2022

• Phase2.2NeuroPasc

  Public
  1•1•0•0•Updated Jun 15, 2022Jun 15, 2022

• Phase2.1NeuroRSummaries

  Public
  Analysis of "Neurological diagnoses in hospitalized COVID-19 patients associated with adverse outcomes: a multinational cohort study"

  neurocovid4ce

  HTML

  •1•2•0•0•Updated May 22, 2022May 22, 2022

• Phase2.2PASCcondIRPackage

  Public
  This package implements conditional independence testing procedures to identify codified concepts related to prior exposure to SARS-CoV-2 in 4CE Phase2.2 Data.

  R

  •

  GNU General Public License v3.0

  •2•1•0•0•Updated Apr 24, 2022Apr 24, 2022

• Phase1.2PASCAnalysisRScript

  Public
  R

  •2•2•0•0•Updated Apr 20, 2022Apr 20, 2022

• Phase1.2QualityControlRpackage

  Public
  R

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Mar 15, 2022Mar 15, 2022

• Phase2.1SurvivalRPackage

  Public
  R

  •1•1•0•0•Updated Feb 17, 2022Feb 17, 2022

• Phase2.2.peds_temporalTrends

  Public
  Temporal trends of distinct phenotypes before and during pandemic in children

  R

  •

  Apache License 2.0

  •1•1•0•0•Updated Feb 13, 2022Feb 13, 2022

• Phase2.1MissingRPackage

  Public
  R

  •1•2•0•0•Updated Feb 8, 2022Feb 8, 2022

• Phase2.1DockerAnalysis

  Public
  Dockerfile

  •

  Other

  •4•7•1•0•Updated Nov 19, 2021Nov 19, 2021

• Phase2.2CovidEmbeddingRPackage

  Public
  C++

  •1•1•0•0•Updated Nov 11, 2021Nov 11, 2021

• Phase2.1SqlDataExtraction

  Public
  SQL code to generate Phase 2.1 CSV files

  TSQL

  •

  Apache License 2.0

  •4•3•0•1•Updated Nov 10, 2021Nov 10, 2021

• Phase2.1DataRPackage

  Public
  R

  •

  Apache License 2.0

  •8•5•0•2•Updated Sep 24, 2021Sep 24, 2021

• Phase2.1ardsRPackage

  Public
  R

  •2•2•0•0•Updated Aug 24, 2021Aug 24, 2021

• Phase1.1SqlDataExtraction

  Public
  Apache License 2.0

  •2•3•2•0•Updated Jul 23, 2021Jul 23, 2021

• Phase2.1SeverityAugRPackage

  Public
  R

  •2•2•0•0•Updated May 22, 2021May 22, 2021

• Phase2.1AdmittedForCovidRPackage

  Public
  R

  •1•1•0•0•Updated Apr 23, 2021Apr 23, 2021