Repositories list

• czid-graphql-federation-server

  Public
  GraphQL Mesh server for CZ ID

  TypeScript

  •

  MIT License

  •0•0•0•2•Updated Jan 17, 2025Jan 17, 2025

• cellxgene-census

  Public
  CZ CELLxGENE Discover Census

  Jupyter Notebook

  •

  MIT License

  •23•91•120•16•Updated Jan 17, 2025Jan 17, 2025

• cryoet-data-portal

  Public
  CryoET Data Portal

  TypeScript

  •

  MIT License

  •11•21•247•12•Updated Jan 17, 2025Jan 17, 2025

• github-actions

  Public
  A collection of re-usable GitHub Actions

  HCL

  •

  MIT License

  •3•5•1•3•Updated Jan 16, 2025Jan 16, 2025

• argo-helm-charts

  Public
  Smarty

  •0•0•0•2•Updated Jan 16, 2025Jan 16, 2025

• cryoet-data-portal-backend

  Public
  CryoET Data Portal API server & ingestion scripts

  Python

  •

  MIT License

  •2•3•6•8•Updated Jan 16, 2025Jan 16, 2025

• platformics

  Public
  Codegen Python GraphQL Entity Framework

  Python

  •

  MIT License

  •0•3•14•2•Updated Jan 16, 2025Jan 16, 2025

• aws-oidc

  Public
  AWS OIDC Federation

  Go

  •

  MIT License

  •5•15•1•2•Updated Jan 16, 2025Jan 16, 2025

• homebrew-tap

  Public
  Ruby

  •2•3•2•0•Updated Jan 15, 2025Jan 15, 2025

• argus-artifacts

  Public
  MIT License

  •0•1•0•0•Updated Jan 15, 2025Jan 15, 2025

• cztack

  Public
  The CZI infrastructure stack.

  HCL

  •

  MIT License

  •25•65•3•3•Updated Jan 15, 2025Jan 15, 2025

• single-cell-curation

  Public
  Code and documentation for the curation of cellxgene datasets

  Python

  •

  MIT License

  •24•39•57•5•Updated Jan 15, 2025Jan 15, 2025

• edu-design-system

  Public
  Design system for Education Projects

  reactdesign-systemstyle-dictionary

  TypeScript

  •

  MIT License

  •4•29•1•2•Updated Jan 15, 2025Jan 15, 2025

• cryoet-data-portal-neuroglancer

  Public
  CryoET Data Portal Neuroglancer configuration helper

  Python

  •

  MIT License

  •2•1•1•6•Updated Jan 15, 2025Jan 15, 2025

• single-cell-data-portal

  Public
  The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.

  TypeScript

  •

  MIT License

  •14•65•261•14•Updated Jan 15, 2025Jan 15, 2025

• blessclient

  Public
  Go client to negotiate SSH certificates

  czisshcertificate+ 3rsyncscpssh-agent

  Go

  •

  MIT License

  •17•64•8•1•Updated Jan 14, 2025Jan 14, 2025

• napari-hub

  Public
  Discover, install, and share napari plugins

  pythontrackingmachine-learning+ 12deep-learninganalysisdetectionpluginsthemesregistrationsegmentation+ 5

  TypeScript

  •

  MIT License

  •18•51•97•11•Updated Jan 14, 2025Jan 14, 2025

• happy

  Public
  Happy Path Deployment Tool

  kubernetesinfrastructureterraform

  Go

  •

  MIT License

  •2•18•13•19•Updated Jan 13, 2025Jan 13, 2025

• camelot

  Public
  Go

  •

  MIT License

  •0•1•0•1•Updated Jan 13, 2025Jan 13, 2025

• go-misc

  Public
  miscellaneous go code

  Go

  •

  MIT License

  •3•7•1•0•Updated Jan 13, 2025Jan 13, 2025

• fogg

  Public
  Manage Infrastructure as Code with less pain.

  terraforminfrastructure-as-codeinfrastructure

  Go

  •

  MIT License

  •20•296•38•3•Updated Jan 13, 2025Jan 13, 2025

• cellxgene-ontology-guide

  Public
  Notebook guide: https://github.com/chanzuckerberg/cellxgene-ontology-guide/blob/main/api/python/notebooks/Python%20API.ipynb

  Python

  •

  MIT License

  •1•6•8•5•Updated Jan 13, 2025Jan 13, 2025

• sci-components

  Public
  2021 Science Design System Component Library

  reactcsstheme+ 1design-system

  TypeScript

  •

  MIT License

  •7•27•112•4•Updated Jan 9, 2025Jan 9, 2025

• czid-workflows

  Public
  Portable WDL workflows for CZ ID production pipelines

  Python

  •

  MIT License

  •7•41•3•8•Updated Jan 6, 2025Jan 6, 2025

• czid-web

  Public
  Infectious Disease Sequencing Platform

  scienceresearchbiology+ 12sequencingcomputational-biologynext-generation-sequencingbioinformatics-pipelineglobal-healthvirologyinfectious-diseases+ 5

  TypeScript

  •

  MIT License

  •24•82•0•2•Updated Jan 6, 2025Jan 6, 2025

• single-cell-explorer

  Public
  Hosted version of cellxgene

  TypeScript

  •

  MIT License

  •3•12•61•1•Updated Jan 6, 2025Jan 6, 2025

• cellxgene

  Public
  An interactive explorer for single-cell transcriptomics data

  datavizscrna-seqtranscriptomics+ 2visualizationscientific

  JavaScript

  •

  MIT License

  •126•654•128•0•Updated Dec 7, 2024Dec 7, 2024

• czi-oss-training

  Public
  Training Materials for Good Open Source Citizenship

  Creative Commons Attribution 4.0 International

  •3•10•4•0•Updated Nov 25, 2024Nov 25, 2024

• miniwdl-viz

  Public
  A library to decompose WDL files into a JSON/YAML, and create a mermaid flowchart

  WDL

  •

  MIT License

  •0•3•0•3•Updated Nov 22, 2024Nov 22, 2024

• napari-cryoet-data-portal

  Public
  A napari plugin to list, preview, and open data from the CZ Imaging Institute's CryoET Data Portal

  Python

  •

  MIT License

  •2•9•4•1•Updated Nov 22, 2024Nov 22, 2024