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@VirtualFlyBrain Virtual Fly Brain

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    107 repositories

    • BrainTrap

      Public
      BrainTrap is a database of 3D protein expression patterns in the Drosophila brain, providing interactive visualization and exploration of confocal datasets showing reporter gene expression and protein localization.
      CSS
      •
      GNU General Public License v2.0
      •1•0•0•0•Updated Nov 30, 2024Nov 30, 2024

    • geppetto-vfb

      Public
      VFB (v2) application
      JavaScript
      •
      Other
      •1•3•66•6•Updated Nov 29, 2024Nov 29, 2024

    • VFB_reporting_results

      Public
      Repository containing the results of various data change and consistency checking.
      Python
      •0•1•2•0•Updated Nov 29, 2024Nov 29, 2024

    • VFB2

      Public
      Virtual Fly Brain Documentation Site
      HTML
      •
      MIT License
      •8•5•166•0•Updated Nov 28, 2024Nov 28, 2024

    • org.geppetto.frontend

      Public
      Geppetto frontend bundle (Web Application)
      JavaScript
      •
      Other
      •25•0•0•32•Updated Nov 28, 2024Nov 28, 2024

    • VFB_connect

      Public
      A library for querying VFB servers (neo4j, owlery, solr)
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•4•31•35•Updated Nov 27, 2024Nov 27, 2024

    • Docker-VFB-Neo4j-ProductionDB

      Public
      Neo4j server loaded with the VFB Production DB
      Dockerfile
      •1•0•0•0•Updated Nov 25, 2024Nov 25, 2024

    • curation

      Public
      A repository of records specifying curation into the VFB Knowledge Base
      Python
      •0•0•22•6•Updated Nov 25, 2024Nov 25, 2024

    • vfb_rest

      Public
      HTML
      •0•0•1•36•Updated Nov 25, 2024Nov 25, 2024

    • vfb-driver-ontology

      Public
      Makefile
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 25, 2024Nov 25, 2024

    • VFB_reporting

      Public
      Scripts for reporting on the state of VFB content and pipeline
      Jupyter Notebook
      •0•0•11•5•Updated Nov 14, 2024Nov 14, 2024

    • vfb-data-ingest-api

      Public
      This repository contains the REST API code for the Data Ingest API
      Python
      •
      Other
      •0•0•11•22•Updated Nov 2, 2024Nov 2, 2024

    • vfb-pipeline-integration-api

      Public
      Python
      •0•0•0•16•Updated Nov 2, 2024Nov 2, 2024

    • vfb-neurotransmitter-predictions

      Public
      Neurotransmitter predictions and confidence values for VFB individuals. Data taken from neuprint.
      Makefile
      •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • vfb-scRNAseq-gene-annotations

      Public
      Makefile
      •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • vfb-EPseq-ontology

      Public
      Makefile
      •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • vfb-scRNAseq-ontology

      Public
      An ontology of Drosophila melanogaster scRNAseq data pulled from FlyBase.
      Makefile
      •0•0•1•0•Updated Oct 30, 2024Oct 30, 2024

    • VFB_connect_api

      Public
      API wrapping VFB_connect library
      Python
      •0•0•1•11•Updated Oct 30, 2024Oct 30, 2024

    • vfb-extension-ontology

      Public
      A small application ontology used by VFB.
      Makefile
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • vfb-pipeline-dumps

      Public
      Pipeline that creates dumps from the triplestore for consumption by the downstream services
      Python
      •
      Apache License 2.0
      •0•0•13•2•Updated Oct 28, 2024Oct 28, 2024

    • VFB_neo4j

      Public
      A python package for writing schema-compliant content to VFB neo4J DBs
      neo4jowlflybase
      Python
      •
      Apache License 2.0
      •1•0•66•16•Updated Oct 28, 2024Oct 28, 2024

    • vfb-pipeline-polishing

      Public
      Final cypher steps after complete pipeline load
      Python
      •
      MIT License
      •0•0•1•0•Updated Oct 25, 2024Oct 25, 2024

    • pipeline

      Public
      A repository for amalgamating pipeline issue tickets and general VFB pipeline doc
      Shell
      •0•1•28•0•Updated Oct 23, 2024Oct 23, 2024

    • owltools

      Public
      OWLTools
      Web Ontology Language
      •
      BSD 3-Clause "New" or "Revised" License
      •33•0•0•35•Updated Oct 21, 2024Oct 21, 2024

    • uk.ac.vfb.geppetto

      Public
      Virtual Fly Brain geppetto code
      Java
      •
      Other
      •1•0•12•14•Updated Oct 15, 2024Oct 15, 2024

    • neo4j2owl

      Public
      Semantics preserving mapping of OWL 2 EL and Neo4J. Under development, do not use.
      vfbvirtualflybrain
      Java
      •
      Apache License 2.0
      •4•6•17•26•Updated Oct 14, 2024Oct 14, 2024

    • vfb-prod

      Public
      Shell
      •
      Apache License 2.0
      •0•0•2•1•Updated Oct 13, 2024Oct 13, 2024

    • vfb-pipeline-collectdata

      Public
      Shell
      •
      Apache License 2.0
      •0•0•8•1•Updated Oct 8, 2024Oct 8, 2024

    • vfb_expression_annotator

      Public
      VFB Expression Annotator tags classes based on the VFB clas expression config
      Java
      •0•0•0•23•Updated Oct 4, 2024Oct 4, 2024

    • VFB_json_schema

      Public
      VFB json schema spec + code for rolling queries producing VFB json schema + related integration tests
      Python
      •
      Apache License 2.0
      •0•0•31•1•Updated Oct 3, 2024Oct 3, 2024