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    • GREGoR Consortium Django application website
      Python
      MIT License
      0077Updated Dec 24, 2024Dec 24, 2024
    • PRIMED Consortium Django application website
      Python
      MIT License
      00105Updated Dec 23, 2024Dec 23, 2024
    • Django app to manage AnVIL workspace permissions
      Python
      MIT License
      01251Updated Dec 23, 2024Dec 23, 2024
    • WDL wrapper for the pgsc_calc workflow
      WDL
      0000Updated Dec 8, 2024Dec 8, 2024
    • WDL
      0000Updated Dec 5, 2024Dec 5, 2024
    • PRIMED file checking workflows
      WDL
      0020Updated Dec 5, 2024Dec 5, 2024
    • A repository for version control of consortium data model(s)
      R
      MIT License
      39120Updated Dec 4, 2024Dec 4, 2024
    • Utilities for checking files in AnVIL
      WDL
      2020Updated Dec 3, 2024Dec 3, 2024
    • R
      0010Updated Nov 21, 2024Nov 21, 2024
    • PRIMED file conversion workflows
      WDL
      0100Updated Nov 20, 2024Nov 20, 2024
    • Code to support data tracking and reporting for GREGoR
      Jupyter Notebook
      0110Updated Nov 18, 2024Nov 18, 2024
    • Example notebooks and code for working with GREGoR data in AnVIL workspaces.
      R
      MIT License
      0020Updated Nov 12, 2024Nov 12, 2024
    • Github actions for pip-tools
      MIT License
      0100Updated Nov 7, 2024Nov 7, 2024
    • GENESIS

      Public
      GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
      R
      1434133Updated Nov 5, 2024Nov 5, 2024
    • Example notebooks for working with PRIMED data in AnVIL workspaces
      HTML
      0100Updated Oct 31, 2024Oct 31, 2024
    • R package to work with AnVIL data models
      R
      Other
      0120Updated Oct 30, 2024Oct 30, 2024
    • Code to query the PGS catalog for PRIMED PMIDs
      Python
      MIT License
      0020Updated Oct 16, 2024Oct 16, 2024
    • Code to fetch dbGaP files using sra-toolkit
      Python
      MIT License
      1001Updated Sep 26, 2024Sep 26, 2024
    • GREGoR file checking workflows
      WDL
      0010Updated Sep 10, 2024Sep 10, 2024
    • Workflows for generating the PRIMED inventory workspace
      R
      MIT License
      0000Updated Jul 26, 2024Jul 26, 2024
    • PRIMED imputation workflow
      WDL
      0000Updated Jul 11, 2024Jul 11, 2024
    • Workflow for running GENESIS on PRIMED data
      WDL
      0000Updated Jul 11, 2024Jul 11, 2024
    • A repository for version control of consortium data model(s)
      R
      MIT License
      2210Updated Jul 2, 2024Jul 2, 2024
    • wgs reprocessing scripts
      WDL
      0000Updated Jun 25, 2024Jun 25, 2024
    • SISG_2024

      Public
      HTML
      2000Updated Jun 12, 2024Jun 12, 2024
    • Run womtool as a github action
      MIT License
      0000Updated May 28, 2024May 28, 2024
    • Code for simulating phenotypes
      R
      6300Updated May 21, 2024May 21, 2024
    • WDL workflow for analysis based on the R GENESIS package
      R
      MIT License
      2000Updated Feb 7, 2024Feb 7, 2024
    • Python code to parse DARs out of a dbGaP application PDF
      Python
      MIT License
      0000Updated Dec 14, 2023Dec 14, 2023
    • wdl_test

      Public
      WDL
      0000Updated Nov 7, 2023Nov 7, 2023